Getting Started

Welcome to Single Cell Browser! Here's how to get started:

1. Browse available datasets on the Home page
2. Click a dataset to view its clusters, markers, and sample composition
3. Open the Feature Plot to visualize a gene's expression on the UMAP
4. Explore the Plotting, Comparisons, and Analysis menus for more tools

Feature Plot

To plot a gene's expression:

1. Select a dataset from the dropdown menu
2. Enter a gene symbol (case-sensitive: Gene for mouse, GENE for human)
3. Adjust plot options as needed
4. Click "Plot" to generate the visualization

Enrichment Analysis

For GO, KEGG, or GSEA analysis:

1. Provide a gene list, or select a file of differentially expressed genes
2. Set the analysis parameters
3. Submit and view results in the Results tab

Tips

• Use split plots to compare expression across conditions or metadata fields
• Try the co-expression plot to visualize two genes at once
• Use the Comparisons tools to line datasets up side by side
• Click help icons (?) for additional information on specific features

Need More Help?

If you need further assistance, please contact us.